Publications

These publications are examples of research made possible with data from CanPath and its regional cohorts.

2016

Design, methods and demographics from phase I of Alberta’s Tomorrow Project cohort: a prospective cohort profile

Authors: Paula J. Robson, Nathan M. Solbak, Tiffany R. Haig, Heather K. Whelan, Jennifer E. Vena, Alianu K. Akawung, William K. Rosner, Darren R. Brenner, Linda S. Cook, Ilona Csizmadi, Karen A. Kopciuk, . Elizabeth McGregor, Christine M. Friedenreich

This article describes Phase I of the ATP which looks at investigators that influence cancer and other diseases. Adults with no previous cancer were recruited and enrolled. 99% of those recruited agreed to be linked with administrative data bases. It was a very successful recruitment process.

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2016

A haplotype-based normalization technique for the analysis and detection of allele specific expression

Authors: Alan Hodgkinson, Jean-Christophe Grenier, Elias Gbeha, Philip Awadalla

The research team examined allele specific expression which can be an identifier for disease loci. They were able to sequence exomes from CARTaGENE cohort and find a significant association between the proportion of sites undergoing ASE within the genome and smoking.

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2016

Prediabetes, depressive and anxiety symptoms, and risk of type 2 diabetes: A community-based cohort study

Authors: Sonya Deschenes, Rachel Burns, Eva Graham, Norbert Schimitz

This study looked at the effect of prediabetes/depression on a diabetes risk. It seemed that prediabetes/depression interacted and resulted in a diabetes increase. Depression has doubled the risk of prediabetes progressing into full on diabetes. Anxiety has also heightned the risk of prediabetes turning into diabetes.

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2016

Rationale, design, and methods for Canadian alliance for healthy hearts and minds cohort study (CAHHM) – a Pan Canadian cohort study

Authors: Sonia S. Anand, Jack V. Tu, Philip Awadalla, Sandra Black, Catherine Boileau, David Busseuil, Dipika Desai, Jean-Pierre Després, Russell J. de Souza, Trevor Dummer, Sébastien Jacquemont, Bartha Knoppers, Eric Larose, Scott A. Lear, Francois Marcotte, Alan R. Moody, Louise Parker, Paul Poirier, Paula J. Robson, Eric E. Smith, John J. Spinelli, Jean-Claude Tardif, Koon K. Teo, Natasa Tusevljak, Matthias G. Friedrich

Canadian Alliance for Healthy Hearts and Minds (CAHHM) is a pan-Canadian, prospective, multi-ethnic cohort study being conducted in Canada. This project has sed CPTP data to help and assist it. CAHHM is a prospective cohort study which aims to examine the health of adults living in Canada.

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2016

Dietary assessment is a critical element of health research – Perspective from the Partnership for Advancing Nutritional and Dietary Assessment in Canada

Authors: Marie-Ève Labonté, Sharon I. Kirkpatrick, Rhonda C. Bell, Beatrice A. Boucher, Ilona Csizmadi, Anita Koushik, Mary R. L’Abbé, Isabelle Massarelli, Paula J. Robson, Isabelle Rondeau, Bryna Shatenstein, Amy F. Subar, and Benoît Lamarche

This was an opinion based paper which argued that while assessing dietary intakes is difficult, it`s not impossible. They believe that building capacity and funding opportunities should be readily available in order to build research. If they were to have these, there would be better understanding in Canada and elsewhere.

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2016

Environments Associated with Moderate-to-Vigorous Physical Activity and Sedentary Behavior of Colorectal Cancer Survivors

Authors: Logan Lawrence, Michelle Stone, Daniel Rainham, Melanie Keats

The reseachers sought to discover locations where CRC survivors engage in PA and SB in order to inform health promoting interventions. It was found that most physical activity (73.7%) took place at home. It was argued the home environment is important to think about when considering how to make people more active.

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2016

Maelstrom Research guidelines for rigorous retrospective data harmonization

Authors: Isabel Fortier, Parminder Raina, Edwin R Van den Heuvel, Lauren E Griffith, Camille Craig, Matilda Saliba, Dany Doiron, Ronald P Stolk, Bartha M Knoppers, Vincent Ferretti, Peter Granda, Paul Burton

This article looked at the best ways to do data harmonization. By adhering to the proposed guidelines, the researchers sought to find the best way getting clean data. They found that by adhering to the guidelines, data harmonization can be easier to undertake.

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2016

Impact of the X Chromosome and sex on regulatory variation

Authors: Kimberly Kukurba, Princy Parsana, Brunilda Balliu, Kevin Smith, Zachary Zappala, David Knowles, Marie-Julie Fave, Joe Davis, Xin Li, Xiaowei Zhu, James Potash, Myrna Weissman, Jianxin Shi, Anshul Kundaje, Douglas Levinson, Philip Awadalla, Sara Mostafavi, Alexis Battle, and Stephen Montgomery

The research team analyzed blood transcriptomes of 922 individuals and they were able to conduct the first large-scale genome wide analysis of sex/genetic variation patterns. They generated chromatin and were able to develop genome-wide insight into how genetic variation shape human gene regulation and disease.

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2016

Central blood pressures in early chronic kidney disease: an analysis of CARTaGENE 

Authors: Rémi Goupil, Dominique Dupuis, Mohsen Agharazii, Pavel Hamet, Stéphan Troyanov, François Madore

The research question for this study was whether CKD is associated with high blood pressure. They found that early CKD is not associated with detrimental central hemodynamic parameters.

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2016

Gain-of-function missense variant in SLC12A2, encoding the bumetanide-sensitive NKCC1 cotransporter, identified in human schizophrenia

Authors: Nancy Merner, Adriana Mercado, Arjun Khanna, Alan Hodgkinson, Vanessa Bruat, Philip Awadalla, Gerardo Gamba, Guy Rouleau, Kristopher Kahle

This study used encoding genetics to determine the relationship of schizophrenia

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