Publications

These publications are examples of research made possible with data from CanPath and its regional cohorts.

2023

Examining the influence of built environment on sleep disruption

Authors: Jaclyn Parks, Millie Baghela, Parveen Bhatti

Researchers sought to understand if modifying aspects of the built environment improved sleep. Using data from 28,385 BC Generations Project participants, they found that increased light-at-night, air pollution (SO2), and living <100 m from a main roadway were associated with insufficient sleep. Greenness had a positive effect on sleep.

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2023

A comparison of machine learning algorithms and traditional regression-based statistical modeling for predicting hypertension incidence in a Canadian population

Authors: Mohammad Ziaul Islam Chowdhury, Alexander A Leung, Robin L Walker, Khokan C Sikdar, Maeve O'Beirne, Hude Quan, Tanvir C Turin

This study evaluates different machine learning algorithms and compares their predictive performance with conventional models to predict hypertension incidence using data from 18,322 Alberta’s Tomorrow Project participants. The study found little difference in predictive performance between the machine learning algorithms and the conventional Cox PH model. The results suggest that conventional regression-based models can perform similarly to machine learning algorithms with good predictive accuracy in a moderate dataset with a reasonable number of features.

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2022

Agreement between self-report and administrative health data on occurrence of non-cancer chronic disease among participants of the BC generations project

Authors: Maryam Darvishian, Jessica Chu, Jonathan Simkin, Ryan Woods, Parveen Bhatti

Linked self-reported chronic disease history data to a Chronic Disease Registry (CDR) that applied algorithms to administrative health data to ascertain diagnoses of multiple chronic diseases in the Province of British Columbia.

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2022

Personalized breast cancer onset prediction from lifestyle and health history information

Authors: Shi-Ang Qi, Neeraj Kumar, Jian-Yi Xu, Jaykumar Patel, Sambasivarao Damaraju, Grace Shen-Tu, Russell Greiner

This article proposes a method for predicting when a woman will develop breast cancer (Bca) based on health and lifestyle history using data from 18,288 women in Alberta’s Tomorrow Project. Their approach produced seven actionable lifestyle features that a woman can modify to show how the model can predict the effects of such changes. This method can be used to identify interventions for those with a greater likelihood of developing BCa.

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2022

Dietary Intake and the Neighbourhood Environment in the BC Generations Project

Authors: Rachel A. Murphy, Gabriela Kuczynski, Parveen Bhatti, Trevor J. B. Dummer

This study examined how neighbourhood factors like access to amenities and social relationships, as well as greenness and walkability, can influence fruit and vegetable intake. ~28,000 participants from the BC Generations Project were involved. Those living in neighbourhoods with greater material and social deprivation were less likely to meet recommendations for fruit and vegetable consumption, while those living in neighbourhoods with higher greenness were more likely to meet recommendations. These findings highlight how multiple neighbourhood characteristics can impact dietary intake.

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2022

Patterns and predictors of adherence to breast cancer screening recommendations in Alberta’s Tomorrow Project

Authors: Olivia K Loewen, Navjot Sandila, Grace Shen-Tu, Jennifer E Vena, Huiming Yang, Kara Patterson, Jian-Yi Xu

This study examined screening patterns in almost 5,000 women in Alberta’s Tomorrow Project. Most participants were up-to-date with screening at enrollment and follow-up, but 21.6% were not up-to-date at follow-up, and 3.2% had never participated. Having a family doctor was the strongest predictor of regular screening, while current smokers were less likely to be regular screeners. The study highlights the importance of promoting awareness of screening recommendations and the role of family doctors in encouraging screening.

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2022

The role of ultra-processed food consumption and depression on type 2 diabetes incidence: a prospective community study in Quebec, Canada

Authors: Akankasha Sen, Anne-Sophie Brazeau, Sonya Deschênes, Hugo Ramiro Melgar-Quiñonez, Norbert Schmitz

Researchers analyzed the association between depression and ultra-processed food (UPF) consumption as risk factors for developing type 2 diabetes (T2D) using baseline data (2009-2010) from 3,880 CARTaGENE participants. Participants with high depressive symptoms and high UPF consumption were at the highest risk for T2D. The study suggests that early management and monitoring of both risk factors could be essential for diabetes prevention.

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2022

Global Biobank Meta-analysis Initiative: Powering genetic discovery across human disease

Authors: Wei Zhou, Masahiro Kanai, Kuan-Han H Wu, Humaira Rasheed, Kristin Tsuo, Jibril B Hirbo, Ying Wang, Arjun Bhattacharya, Huiling Zhao, Shinichi Namba, Ida Surakka, Brooke N Wolford, Valeria Lo Faro, Esteban A Lopera-Maya, Kristi Läll, Marie-Julie Favé, Juulia J Partanen, Sinéad B Chapman, Juha Karjalainen, Mitja Kurki, Mutaamba Maasha, Ben M Brumpton, Sameer Chavan, Tzu-Ting Chen, Michelle Daya, Yi Ding, Yen-Chen A Feng, Lindsay A Guare, Christopher R Gignoux, Sarah E Graham, Whitney E Hornsby, Nathan Ingold, Said I Ismail, Ruth Johnson, Triin Laisk, Kuang Lin, Jun Lv, Iona Y Millwood, Sonia Moreno-Grau, Kisung Nam, Priit Palta, Anita Pandit, Michael H Preuss, Chadi Saad, Shefali Setia-Verma, Unnur Thorsteinsdottir, Jasmina Uzunovic, Anurag Verma, Matthew Zawistowski, Xue Zhong, Nahla Afifi, Kawthar M Al-Dabhani, Asma Al Thani, Yuki Bradford, Archie Campbell, Kristy Crooks, Geertruida H de Bock, Scott M Damrauer, Nicholas J Douville, Sarah Finer, Lars G Fritsche, Eleni Fthenou, Gilberto Gonzalez-Arroyo, Christopher J Griffiths, Yu Guo, Karen A Hunt, Alexander Ioannidis, Nomdo M Jansonius, Takahiro Konuma, Ming Ta Michael Lee, Arturo Lopez-Pineda, Yuta Matsuda, Riccardo E Marioni, Babak Moatamed, Marco A Nava-Aguilar, Kensuke Numakura, Snehal Patil, Nicholas Rafaels, Anne Richmond, Agustin Rojas-Muñoz, Jonathan A Shortt, Peter Straub, Ran Tao, Brett Vanderwerff, Manvi Vernekar, Yogasudha Veturi, Kathleen C Barnes, Marike Boezen, Zhengming Chen, Chia-Yen Chen, Judy Cho, George Davey Smith, Hilary K Finucane, Lude Franke, Eric R Gamazon, Andrea Ganna, Tom R Gaunt, Tian Ge, Hailiang Huang, Jennifer Huffman, Nicholas Katsanis, Jukka T Koskela, Clara Lajonchere, Matthew H Law, Liming Li, Cecilia M Lindgren, Ruth J F Loos, Stuart MacGregor, Koichi Matsuda, Catherine M Olsen, David J Porteous, Jordan A Shavit, Harold Snieder, Tomohiro Takano, Richard C Trembath, Judith M Vonk, David C Whiteman, Stephen J Wicks, Cisca Wijmenga, John Wright, Jie Zheng, Xiang Zhou, Philip Awadalla, Michael Boehnke, Carlos D Bustamante, Nancy J Cox, Segun Fatumo, Daniel H Geschwind, Caroline Hayward, Kristian Hveem, Eimear E Kenny, Seunggeun Lee, Yen-Feng Lin, Hamdi Mbarek, Reedik Mägi, Hilary C Martin, Sarah E Medland, Yukinori Okada, Aarno V Palotie, Bogdan Pasaniuc, Daniel J Rader, Marylyn D Ritchie, Serena Sanna, Jordan W Smoller, Kari Stefansson, David A van Heel, Robin G Walters, Sebastian Zöllner; Biobank of the Americas; Biobank Japan Project; BioMe; BioVU; CanPath - Ontario Health Study; China Kadoorie Biobank Collaborative Group; Colorado Center for Personalized Medicine; deCODE Genetics; Estonian Biobank; FinnGen; Generation Scotland; Genes & Health Research Team; LifeLines; Mass General Brigham Biobank; Michigan Genomics Initiative; National Biobank of Korea; Penn Medicine BioBank; Qatar Biobank; QSkin Sun and Health Study; Taiwan Biobank; HUNT Study; UCLA ATLAS Community Health Initiative; Uganda Genome Resource; UK Biobank; Alicia R Martin, Cristen J Willer, Mark J Daly, Benjamin M Neale

The Global Biobank Meta-analysis Initiative is a collaborative network of 23 biobanks, representing more than 2.2M consented participants with genetic data linked to electronic health records. This collaborative effort will improve genome-wide association studies’ power for diseases, benefit understudied diseases, and improve risk prediction.

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2022

Association of dairy consumption patterns with the incidence of type 2 diabetes: Findings from Alberta’s Tomorrow Project

Authors: Emad Yuzbashian, Mohammadreza Pakseresht, Jennifer Vena, Catherine B Chan

Researchers investigated the relationship between dairy consumption and the risk of developing type 2 diabetes (T2D) with data from Alberta’s Tomorrow Project (ATP). 15,016 women and 8,615 men completed a food-frequency questionnaire and were followed up over time to determine T2D incidence. They found that higher consumption of whole milk, regular cheese, and non-fat milk was associated with decreased risk of incident T2D only in men. The study suggests that combining different dairy products might be good for men’s health.

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2022

Population-Based Recalibration of the Framingham Risk Score and Pooled Cohort Equations

Authors: Maneesh Sud, Atul Sivaswamy, Anna Chu, Peter C. Austin, Todd J. Anderson, David M.J. Naimark, Michael E. Farkouh, Douglas S. Lee, Idan Roifman, George Thanassoulis, Karen Tu, Jacob A. Udell, Harindra C. Wijeysundera, and Dennis T. Ko

The Framingham Risk Score (FRS) and Pooled Cohort Equations (PCEs) overestimate risk in many contemporary cohorts. This study sought to determine if the recalibration of these scores using contemporary population-level data improves risk stratification for statin therapy.

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