Publications

These publications are examples of research made possible with data from CanPath and its regional cohorts.

2023

From genetic association to forensic prediction: Computational methods and tools for identifying phenotypically informative single nucleotide polymorphisms

Authors: Cristina L. Abbatangelo, Frida Lona Durazo, Frank R. Wendt, Esteban J. Parra, Nicole M.M. Novroski

The researchers assessed how pigmentation genetics can enhance forensic DNA phenotyping (FDP) for predicting externally visible characteristics (EVCs) such as hair, eye, and skin color. Using a genome-wide association study (GWAS) approach, they analyzed single nucleotide polymorphisms (SNPs) associated with pigmentation traits in data from CARTaGENE, Alberta’s Tomorrow Project, Ontario Health Study, BC Generations Project, and Atlantic PATH. Specifically, they examined genetic variants related to eye color in individuals with a blue eye color background (rs12913832:GG genotype). The study demonstrated how GWAS data, combined with post-genotyping analyses and functional annotation, can provide insights into pigmentation-associated loci. The findings contribute to refining FDP accuracy and may serve as a reference for future genomic investigations of EVCs in forensic settings.

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2021

Long-term exposure to air pollution and mortality in a prospective cohort: The Ontario Health Study

Authors: Zhang, Z., Wang, J., Kwong, J. C., Burnett, R. T., van Donkelaar, A., Hystad, P., Martin, R. V., Bai, L., McLaughlin, J., & Chen, H.

The researchers investigated the association between long-term exposure to air pollution and mortality using data from 88,615 participants in the Ontario Health Study from 2009 to 2017. They assessed exposure to fine particulate matter (PM2.5) and nitrogen dioxide (NO2) at participants’ residences and analyzed non-accidental, cardiovascular, and respiratory mortality risks using Cox proportional hazard models. Stronger associations were observed among physically active participants, smokers, and individuals with lower household income. These findings suggest that further improvements in air quality may reduce mortality risk, even in regions with low air pollution levels.

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2021

Investigating the causal role of MRE11A p.E506* in breast and ovarian cancer

Authors: Islam Elkholi, Massimo Di Iorio, Somayyeh Fahiminiya, Suzanna Arcand, HyeRim Han, Clara Nogué, Supriya Behl, Nancy Hamel, Sylvie Giroux, Manon de Ladurantaye, Olga Aleynikova, Walter Gotlieb, Jean-François Côté, François Rousseau, Patricia Tonin, Diane Provencher, Anne-Marie MesMasson, Mohammad Akbari, Barbara Rivera, William Foulkes

This study investigated if MRE11A is a true predisposition gene for hereditary breast and ovarian cancer. Investigations suggested that the identified variant is not associated with an increased risk of developing breast or ovarian cancer, and suggests a lack of clinical utility of MRE11A testing in HBOC, at least in the White/Caucasian populations.

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