Synthetic Dataset Workshop
Join us for an exclusive hands-on workshop on the CanPath Synthetic Dataset, designed for faculty, researchers, and trainees looking to explore Canada’s largest population health dataset. This workshop will introduce participants to Lifebit’s cloud-based platform and provide practical training on analyzing synthetic health data.
What is the CanPath Synthetic Dataset?
The CanPath Synthetic Dataset is a versatile resource designed for research, education, and practical applications. It was manipulated to mimic CanPath’s nationally harmonized data but does not include or reveal actual data of any CanPath participants.
Interested in exploring the data? Check out the CanPath Data Dictionary.
What is the Trusted Research Environment?
The Trusted Research Environment (TRE) is a secure, cloud-based platform where researchers can access and analyze CanPath data without downloading it to their local machines. The TRE ensures data privacy and security, providing a controlled environment for conducting research while offering powerful tools for analysis. Participants in this workshop will learn how to navigate and use the TRE efficiently. Lifebit, CanPath and AWS have collaborated to bring this platform to life.
Who should attend?
This workshop is open to:
- Faculty/staff using the dataset for education (e.g., incorporating it into a course assignment).
- Faculty/staff using the dataset for training purposes (e.g., teaching trainees how to analyze population health data or preparing to apply for real CanPath data access).
- Trainees (e.g., postdoctoral fellows, graduate students, undergraduate students) interested in learning how to work with CanPath data.
Learning objectives
By the end of the workshop, participants will:
- Navigate and analyze the CanPath Synthetic Dataset using the Lifebit cloud-based platform.
- Work with pre-created analytical pipelines in R and Python (basic familiarity required).
- Understand how to bring in additional data and use platform tools such as the Cohort Browser, Airlock, and Data Factory.
- Gain insights from real-world case studies and demonstrations from CanPath experts.
- Connect with fellow researchers, instructors, and clinician scientists to foster future collaborations.
Agenda
The final agenda will be sent to attendees prior to the event.
| Time | Session |
|---|---|
| 9:00 AM | Introduction to CanPath, Lifebit, staff and attendees |
| 9:30 AM | Training on the Lifebit platform and guided exercise |
| 11:00 AM | Coffee Break |
| 11:15 AM | Demonstration and case studies with CanPath data |
| 12:00 PM | Lunch Break |
| 1:00 PM | Hands-on analyses in the platform |
| 2:30 PM | Discussion: key learnings and future data strategy |
| 3:30 PM | Snacks and networking reception |
Meet the CanPath and Lifebit presenters
Noah is responsible for providing coordination and oversight of activities related to the day-to-day operations of the National Coordinating Centre, including supervision of NCC staff, overall project management, financial management, stakeholder relationship management, leading the development of memoranda of understanding and the effective drafting and negotiation of research related agreements and service agreements liaising between internal and external stakeholders, and acting as a liaison between the Executive Director and collaborators/partners.
As Data Manager, Sheraz is part of the Access Office and supports data requests from national and international researchers. He manages CanPath research data, generates datasets for approved projects, develops and maintains components of data auditing programs for quality assurance purposes, and provides consultative advice on data requirements.
As a Senior Client Success Manager, Jeff supports cloud-based research projects on the Lifebit platform for for-profit, non-profit, and government-affiliated projects. He works directly with key stakeholders and users to understand their research goals and works cross-functionally within Lifebit to ensure those goals are attainable. Jeff has almost a decade of bioinformatics research experience. He started in a small microbiology lab at his liberal arts undergraduate institution, analyzing 16S microbial sequences to better understand the role of the microbiome in human health. After college, he went on to graduate school, where he earned his Ph.D. in Neuroscience from the University of Vermont. His dissertation focused on the development of machine learning tools to improve the prioritization of genes for neurodegenerative disorders like Alzheimer’s Disease.
Sangram is part of the Solutions Management team at Lifebit, where he oversees the company’s Health and AI product and solutions offerings. With a strong background in Genomics Research, he bridges the gap between scientific innovation and real-world application, helping to shape solutions that address the needs of healthcare and research organizations. He works cross-functionally with product, engineering, and commercial teams to drive strategic initiatives, ensure alignment with client needs, and support the successful delivery of impactful, data-driven solutions.
Additional support
Need extra help? Attendees can attend Office Hours to get one-on-one support from Lifebit and CanPath experts. Participants can book sessions for personalized assistance. The location, date, and time will be announced soon.
How to apply
- Participants must fill out an application to be considered.
- Applications are accepted on a rolling basis.
- Initial deadline: March 28
- Space is limited! Apply early for the best chance of securing a spot.
Frequently asked questions
Do I need experience with cloud-based environments?
No, this workshop is a great opportunity to learn how to use a cloud-based research platform.
Do I need programming experience?
Some familiarity with R and Python is helpful. While we provide pre-created analytical pipelines, you’ll need to understand how to move code around.
Will the workshop be offered in French?
CanPath is a bilingual organization, but this workshop will be delivered in English. Future training sessions may be available in French if there is interest.
Will I receive a certificate of completion?
Yes!